#Codoncode aligner software#
It was originally developed for the computer program Phred to help in the automation of DNA sequencing in the Human Genome MUSCLE (alignment software) MUltiple Sequence Comparison by Log-Expectation (MUSCLE) is computer software for multiple sequence alignment of protein and nucleotide sequences. When originally developed, Phred Phred quality score A Phred quality score is a measure of the quality of the identification of the nucleobases generated by automated DNA sequencing. It is open-source software, released under a BSD 3-clause license Phred (software) Phred is a computer program for base calling, that is to say, identifying a nucleobase sequence from fluorescence "trace" data generated by an automated DNA sequencer that uses electrophoresis and 4-fluorescent dye method. It is part of the Phred-Phrap-Consed package Staden Package The Staden Package is computer software, a set of tools for DNA sequence assembly, editing, and sequence analysis. Originally developed for sequence assemblies created with phrap, recent versions also support other sequence assembly programs like Newbler Phrap Phrap is a widely used program for DNA sequence assembly. Consed Consed is a program for viewing, editing, and finishing DNA sequence assemblies.
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